Gut Markers

Faecalibacterium prausnitzii (F. prausnitzii) is an important beneficial bacterium in the human gut, recognized for its anti-inflammatory properties. It plays a crucial role in maintaining gut health by supporting a balanced microbiome and reinforcing the intestinal barrier.

Faecalibacterium prausnitzii

The quantitative stool sugar test is a diagnostic tool that measures the amount of specific sugars in stool to evaluate carbohydrate malabsorption. It helps identify conditions such as lactose intolerance, fructose intolerance, and other disorders affecting sugar digestion and absorption. By detecting undigested sugars like lactose, fructose, or sorbitol in the stool, this test assists healthcare providers in determining which sugars the digestive system has difficulty processing, often associated with symptoms such as bloating, gas, diarrhea, and abdominal pain.

Quantitative Determination of Sugar

Zonulin is a protein that regulates the permeability of tight junctions between cells in the digestive tract. It plays a key role in maintaining the intestinal barrier by controlling the passage of substances, such as nutrients and antigens, from the gut into the bloodstream. Imbalances in zonulin levels can affect gut permeability, potentially contributing to various health issues.

Zonulin

Candida spp is a group of yeast-like fungi that can affect various parts of the body, including the gut and vagina. These fungi often cause symptoms such as itching, discomfort, and discharge, typically resulting from an imbalance in the body’s natural flora. In the gut, Candida spp can interfere with digestion, leading to bloating and changes in bowel habits. Factors such as diet, overall health, and antibiotic use can contribute to their overgrowth, and addressing these factors is important to restore balance and relieve symptoms.

Candida spp

Bile acids are compounds essential for fat digestion, produced by the liver and stored in the gallbladder. While most are reabsorbed into the body, some are eliminated in stool. Measuring bile acids in stool helps evaluate digestive health, especially in diagnosing fat malabsorption and related disorders.

Bile acids

Fecal occult blood (FOB) is a test that detects hidden blood in the stool, which cannot be seen with the naked eye. The presence of FOB can be an important sign of internal gastrointestinal bleeding, often occurring without obvious symptoms. FOB testing is a non-invasive method used to help identify potential underlying medical conditions affecting the digestive tract.

Fecal occult blood

Hydrogen breath testing is a diagnostic tool that measures the amount of hydrogen in the breath, which is produced by bacterial fermentation in the intestines. This test is commonly used to identify conditions like Small Intestinal Bacterial Overgrowth (SIBO), fructose intolerance, and sorbitol intolerance. Elevated hydrogen levels suggest that undigested carbohydrates are being fermented by gut bacteria, which can cause symptoms such as bloating, diarrhea, and abdominal discomfort.

Hydrogen

D-arabinitol is a sugar alcohol used as a biomarker in the body to help detect Candida infections. Elevated levels of D-arabinitol often indicate an overgrowth of Candida, especially in immunocompromised individuals. Measuring D-arabinitol provides a faster and less invasive way to diagnose systemic candidiasis compared to traditional culture methods.

D-arabinitol

Trimethylamine (TMA) is a metabolite produced by gut bacteria during the breakdown of choline, carnitine, and lecithin—nutrients commonly found in meat, eggs, and dairy. In the liver, TMA is converted into Trimethylamine N-oxide (TMAO), a compound that has been linked to cardiovascular risk in several studies. Elevated TMA/TMAO levels may reflect high microbial conversion activity in the gut, imbalanced microbiota, or a diet rich in animal-based products. While research is ongoing, high TMAO has been associated with inflammation and impaired cholesterol metabolism. Balanced gut flora and plant-forward diets may help maintain healthy TMAO levels.

TMA / TMAO (Trimethylamine / Trimethylamine N-oxide)

Secondary bile acids are produced in the colon through bacterial modification of primary bile acids originally made in the liver. While they contribute to digestion and microbial balance, high levels may indicate dysbiosis, excessive fat consumption, or disrupted bile acid metabolism. Certain secondary bile acids, such as deoxycholic acid (DCA) and lithocholic acid (LCA), have been linked to mucosal irritation, inflammation, and a heightened risk of colorectal conditions when levels remain elevated. Testing their presence in stool aids in evaluating gut microbial activity and bile detoxification.

Secondary bile acids

Ruminococcus spp. are a group of anaerobic bacteria within the Firmicutes phylum, commonly found in the human gut microbiota. They play a significant role in fermenting complex carbohydrates and producing short-chain fatty acids like acetate and butyrate, which support gut health and energy metabolism. Ruminococcus species are considered important for maintaining a balanced gut environment, particularly because of their fiber-degrading abilities. Altered levels of Ruminococcus have been linked to digestive issues, irritable bowel syndrome (IBS), and metabolic disorders.

Ruminococcus spp.

Roseburia spp. are beneficial, anaerobic bacteria belonging to the Firmicutes phylum and commonly found in the healthy human gut. These bacteria are recognized for their ability to produce butyrate, a short-chain fatty acid that serves as a crucial energy source for colonocytes and helps reduce inflammation in the gut. A balanced level of Roseburia is often linked to better metabolic health, improved gut barrier function, and a lower risk of inflammatory disorders. Reduced levels have been associated with conditions such as obesity, type 2 diabetes, and inflammatory bowel disease.

Roseburia spp.

Putrescine is a biogenic amine produced through the bacterial and cellular breakdown of the amino acid ornithine. It contributes to cell growth, tissue regeneration, and the regulation of intestinal function. Elevated putrescine levels may result from increased microbial fermentation, protein breakdown, or intestinal dysbiosis. Balanced levels indicate normal gut metabolic activity and effective detoxification processes.

Putrescine

Providencia spp. are gram-negative, facultatively anaerobic bacteria that belong to the Enterobacteriaceae family. They are typically not dominant members of the gut microbiome but can be present in small amounts. Some species, such as Providencia stuartii and Providencia rettgeri, are considered opportunistic pathogens and have been linked to urinary tract infections and gastrointestinal issues. Elevated levels in a stool sample may indicate microbial imbalance (dysbiosis) or an overgrowth of potentially harmful strains. Providencia species are also known for their ability to produce urease and contribute to ammonia production.

Providencia spp.

Proteobacteria is a large phylum of gram-negative bacteria that includes both harmless commensals and potential pathogens. In the gut, a small amount of Proteobacteria can be normal, but elevated levels are often considered a marker of dysbiosis and inflammation. This group includes species such as Escherichia, Salmonella, Helicobacter, and Klebsiella, some of which are linked to gastrointestinal disorders, infections, and metabolic imbalances. An increased abundance of Proteobacteria may reflect microbial instability or a pro-inflammatory gut environment.

Proteobacteria

Phenols are organic compounds produced by gut bacteria during the fermentation of certain amino acids, especially tyrosine. Some phenols, like p-cresol, can be toxic at high concentrations and are linked to dysbiosis or imbalances in the gut microbiota. Elevated phenol levels in stool may indicate microbial activity that could strain the liver’s detoxification systems. Monitoring phenols helps evaluate how effectively the gut is managing protein breakdown and microbial fermentation.

Phenols

Morganella spp., most notably Morganella morganii, are gram-negative bacteria belonging to the Enterobacteriaceae family. They are considered opportunistic pathogens and are occasionally found in the human intestinal tract as part of the normal flora. However, elevated levels in stool may indicate dysbiosis or potential infection risk, especially in immunocompromised individuals. Morganella is also known for its production of biogenic amines, such as putrescine and cadaverine, which can contribute to gut and systemic symptoms. In clinical settings, Morganella morganii has been associated with urinary tract infections and other hospital-acquired infections.

Morganella spp.

Methanobrevibacter species are archaea—microorganisms distinct from bacteria—that mainly reside in the human gut. These microbes are recognized for producing methane gas as a byproduct of fermentation, particularly from hydrogen and carbon dioxide. Elevated levels of Methanobrevibacter spp. have been linked to slowed intestinal transit and symptoms such as constipation and bloating. Unlike many bacteria, archaea are not affected by standard antibiotics, making their overgrowth more challenging to manage. Their presence offers insight into the balance of microbial communities and gas production within the gut.

Methanobrevibacter spp.

Indoxyl sulfate is a uremic toxin produced when gut bacteria break down the amino acid tryptophan into indole, which is then absorbed and transformed into indoxyl sulfate in the liver. While small amounts are typically eliminated through the kidneys, elevated levels may suggest impaired detoxification, dysbiosis, or kidney stress. Indoxyl sulfate has been associated with oxidative stress, systemic inflammation, and vascular dysfunction—particularly in people with reduced kidney function. It acts as a marker of both microbial activity and the body’s capacity to process and remove metabolic waste.

Indoxyl sulfate

Indolpropionic acid (IPA) is a microbial metabolite derived from the amino acid tryptophan. It is recognized for its antioxidant properties and contributes to protecting gut barrier integrity and regulating glucose metabolism. Elevated levels are typically linked to a balanced gut microbiota and a healthy intestinal environment. Low concentrations may suggest reduced microbial diversity, altered tryptophan metabolism, or increased oxidative stress.

Indolpropionic Acid

Indole-3-acetic acid is a tryptophan-derived metabolite produced by intestinal bacteria. It plays a role in gut–liver communication and can affect oxidative stress and intestinal permeability. Elevated IAA levels may indicate dysbiosis, increased bacterial tryptophan metabolism, or altered liver detoxification pathways. Normal levels suggest balanced gut microbiota activity and effective metabolic clearance.

Indole-3-Acetic Acid (IAA)

Histamine-producing bacteria are gut microbes capable of converting the amino acid histidine into histamine, a biogenic amine that plays a central role in immune responses and allergic reactions. While histamine is a necessary signaling molecule, excess production in the gut can contribute to symptoms resembling allergies, such as rashes, headaches, or digestive discomfort. These bacteria may thrive in the presence of chronic stress, poor gut barrier function, or diets rich in histidine-containing foods. Elevated levels are associated with conditions like histamine intolerance or pseudoallergies. Maintaining a balanced microbiome and proper gut barrier integrity may help reduce histamine load from microbial sources.

Histamine-producing bacteria

Hippuric acid is a metabolic compound produced in the liver through the conjugation of benzoic acid with glycine. It indicates both detoxification capacity and microbial activity in the gut. Elevated levels may suggest increased microbial fermentation, exposure to certain food additives, or an active detoxification response. Low concentrations can result from reduced liver conjugation capacity or decreased microbial production of precursors.

Hippuric Acid

Fusobacterium is a genus of anaerobic, gram-negative bacteria naturally found in the human oral cavity, gastrointestinal tract, and sometimes in the vaginal flora. While some species may exist as part of a normal microbiome, Fusobacterium is also known for its association with inflammation and infection. High levels in the gut have been linked to conditions such as inflammatory bowel disease (IBD) and colorectal cancer. Its presence is often considered a marker of microbial imbalance or pathogenic overgrowth, especially when found alongside symptoms like bloating or altered bowel habits.

Fusobacterium

Eubacterium spp. are a diverse group of anaerobic bacteria found in the human gut, classified within the Firmicutes phylum. Many species within this genus play a beneficial role in maintaining gut health by producing short-chain fatty acids (SCFAs), particularly butyrate. These compounds help nourish colon cells, support immune function, and reduce inflammation. Some species may also be involved in bile acid metabolism and vitamin synthesis. An imbalance in Eubacterium populations may be associated with dysbiosis or chronic gastrointestinal conditions.

Eubacterium spp.

Equol is a compound produced by gut bacteria during the metabolism of the soy isoflavone daidzein. It functions as a non-steroidal estrogen and may offer various health benefits, including antioxidant and hormone-balancing effects. However, only certain individuals have the specific gut bacteria capable of producing equol. Measuring equol in stool samples helps determine whether the gut microbiome can efficiently convert daidzein, providing insight into microbial diversity and function related to estrogen metabolism.

Equol

Enterotypes are classifications of the human gut microbiome based on the dominant bacterial groups and their metabolic functions. There are three main enterotypes: Bacteroides-dominant (Type 1), Prevotella-dominant (Type 2), and Ruminococcus-dominant (Type 3). Each type has unique characteristics in how nutrients like fats, carbohydrates, and proteins are metabolized. For example, Prevotella (Type 2) is more efficient at carbohydrate utilization, especially in fiber-rich diets, but less capable of synthesizing certain vitamins. Your enterotype may influence nutrient absorption, gut health, and how your body responds to different types of diets.

Enterotype

The Dysbiosis Index is a metric used to evaluate the level of imbalance in the gut microbiome, indicating the presence and severity of dysbiosis. It measures changes in microbial diversity and composition compared to a healthy reference group. A higher index indicates more significant dysbiosis, which may be associated with health problems such as inflammation, digestive disorders, or metabolic conditions.

Dysbiosis

Diversity refers to the range of bacterial species found in the gut microbiome. A higher microbial diversity is typically linked to better digestive health, immune function, and resilience against pathogens. Conversely, low diversity may be associated with inflammation, poor nutrient absorption, and various chronic health issues.

Diversity

Desulfovibrio piger is a common sulfate-reducing bacterium (SRB) in the human gut microbiota. It reduces sulfate and other sulfur compounds into hydrogen sulfide (H₂S), a gas that in small amounts plays physiological roles but in excess can be toxic to intestinal cells. Elevated levels of D. piger have been linked to gastrointestinal disorders such as inflammatory bowel disease (IBD) and irritable bowel syndrome (IBS). Its abundance may indicate increased sulfur intake through diet or an imbalanced microbial community that promotes sulfur metabolism.

Desulfovibrio piger

Desulfomonas pigra is a species of sulfate-reducing bacteria (SRB) found in anaerobic environments, including the human gut. It plays a role in sulfur metabolism by reducing sulfate to hydrogen sulfide (H₂S). While hydrogen sulfide is a naturally occurring compound in the colon, elevated levels produced by SRBs like D. pigra can disrupt intestinal barrier function and contribute to gastrointestinal inflammation or discomfort. Increased abundance of Desulfomonas pigra may indicate an overgrowth of sulfur-reducing microbes, potentially associated with diets high in sulfur-containing foods or imbalances in gut microbiota.

Desulfomonas pigra

Coprococcus spp. are beneficial bacteria in the human gut microbiome, belonging to the Firmicutes phylum. These microbes are known for their ability to produce butyrate, a short-chain fatty acid that supports gut barrier integrity, modulates inflammation, and promotes overall digestive health. Higher levels of Coprococcus are often associated with a well-balanced microbiome and improved mental well-being, as butyrate can also influence brain health through the gut-brain axis. Low levels may indicate poor fiber fermentation, gut dysbiosis, or inflammation. Their presence is generally considered a marker of a healthy, fiber-rich diet.

Coprococcus spp.

Citrobacter spp. are a group of gram-negative bacteria belonging to the Enterobacteriaceae family. They are commonly found in soil, water, and the intestinal tracts of humans and animals. While some species are part of the normal gut flora in small amounts, elevated levels may indicate dysbiosis or overgrowth. Certain species, such as Citrobacter freundii, have been associated with gastrointestinal disturbances, urinary tract infections, and hospital-acquired infections in vulnerable individuals. In stool testing, the presence of Citrobacter may indicate microbial imbalance, immune stress, or prior antibiotic use.

Citrobacter spp.

Candida tropicalis is a yeast species that can exist as part of the normal human microbiota, particularly in the gastrointestinal tract and mucosal surfaces. It has a higher pathogenic potential compared to some other non-albicans Candida species and is commonly associated with systemic infections in immunocompromised individuals. In the gut, elevated levels of C. tropicalis may indicate fungal overgrowth, dysbiosis, or a weakened immune system. Its presence in stool testing can help identify imbalances in the gut mycobiome and potential sources of inflammation or infection.

Candida tropicalis

Candida parapsilosis is a yeast species that may be part of the normal human microbiota, especially on the skin and in the gastrointestinal tract. While usually harmless in healthy individuals, it can become opportunistic and cause infections, particularly in hospitalized or immunocompromised patients. It is often linked to catheter-associated infections, wound infections, and sometimes gastrointestinal issues. Increased levels in stool may suggest an imbalance in the gut microbiome, recent antibiotic use, or weakened immune function. Tracking its presence can be important for evaluating fungal overgrowth or gut dysbiosis.

Candida parapsilosis

Candida lusitaniae is a less common yeast species that can be part of the normal flora in the human body but has been linked to opportunistic infections, especially in individuals with weakened immune systems. It is notable for its potential resistance to certain antifungal treatments, particularly amphotericin B. In stool analysis, the presence of C. lusitaniae may indicate fungal overgrowth or dysbiosis, especially when found in elevated amounts. Detecting it is important for evaluating gut microbial balance and guiding further clinical investigation if necessary.

Candida lusitaniae

Candida krusei is a species of yeast that can be part of the gut mycobiome but is generally found in low numbers. It is known for its natural resistance to certain antifungal treatments, especially fluconazole, making its identification clinically important. An overgrowth of C. krusei may occur in individuals with disrupted gut flora, weakened immune systems, or high sugar consumption. Elevated levels in stool may indicate an imbalance in the microbial community or a yeast overgrowth condition that could contribute to digestive discomfort and systemic symptoms.

Candida krusei

Candida glabrata is a species of yeast that naturally inhabits the human gastrointestinal and genitourinary tracts. While usually harmless in healthy individuals, it can become opportunistic in people with weakened immune systems, potentially leading to infections. Compared to other Candida species, C. glabrata is often more resistant to common antifungal medications. Its overgrowth in stool samples may signal microbial imbalance (dysbiosis), immune suppression, or prior antibiotic use. Tracking its levels can provide valuable insights into overall gut health and the risk of fungal overgrowth.

Candida glabrata

Candida dubliniensis is a yeast species closely related to Candida albicans and can be part of the normal microbial flora in the gastrointestinal tract. Under certain conditions, such as weakened immunity, dysbiosis, or high sugar intake, it can overgrow and contribute to fungal imbalance and gastrointestinal symptoms. It is less common than C. albicans but shares many similar characteristics, including its ability to form biofilms and cause mucosal infections. Measuring its levels in stool helps assess fungal overgrowth and the balance of the gut mycobiome.

Candida dubliniensis

Butyrivibrio spp. are beneficial gut bacteria known for producing butyrate, a short-chain fatty acid that plays a key role in maintaining intestinal health. Butyrate supports the integrity of the gut lining, reduces inflammation, and serves as a primary energy source for colon cells. The presence of Butyrivibrio is generally considered a positive indicator of a healthy microbiome. Low levels may suggest reduced butyrate production, which can be associated with intestinal inflammation or dysbiosis. These bacteria thrive on dietary fiber and are part of the Firmicutes phylum.

Butyrivibrio spp.

Bilophila wadsworthii is a gram-negative, anaerobic, sulfur-reducing bacterium commonly present in small amounts in the human gut. It can metabolize bile acids and reduce sulfur compounds to hydrogen sulfide (H₂S), a gas that, in excessive quantities, can be toxic to gut epithelial cells and disrupt intestinal integrity. Increased levels of Bilophila wadsworthii have been linked to inflammatory conditions like colitis and may signal a dysbiotic gut environment, particularly in response to high-fat or high-animal protein diets. This bacterium is considered a potential pathobiont due to its ability to trigger inflammation under certain circumstances.

Bilophila wadsworthii

Beta-glucuronidase is an enzyme produced by certain gut bacteria that can break the bond between glucuronic acid and various toxins, hormones, or drugs that the liver has prepared for elimination. Elevated beta-glucuronidase activity in stool may indicate a microbial imbalance and can interfere with detoxification by reactivating substances like estrogen and xenobiotics in the colon. This reactivation may contribute to systemic toxicity or hormonal imbalances. Measuring beta-glucuronidase in stool helps assess microbial metabolism and detoxification efficiency in the gut.

Beta-glucuronidase

Ammonia is a nitrogen-containing compound produced in the gut through the breakdown of proteins and amino acids by intestinal bacteria. In a healthy gut, most ammonia is either used by microbes or absorbed and detoxified by the liver. Elevated fecal ammonia levels may indicate excessive protein fermentation, gut dysbiosis, or an imbalance between beneficial and pathogenic bacteria. High levels can contribute to mucosal irritation, inflammation, and may compromise gut barrier function. Ammonia levels are a useful marker of microbial protein metabolism and intestinal health.

Ammonia

The stool pH value measures the acidity or alkalinity within the intestines. It reflects the balance of metabolic processes such as fermentation and protein breakdown. A low stool pH often indicates increased fermentation of complex sugars by intestinal bacteria, which can acidify the stool. Conversely, a high stool pH may result from excessive protein metabolism, producing ammonia and other compounds that elevate the stool’s pH level.

pH value

The stool fat test is a diagnostic tool that measures the amount of fat expelled in stool samples. It is used to evaluate fat absorption and identify malabsorption syndromes. High fat levels in stool, referred to as steatorrhea, may indicate digestive or absorption problems within the gastrointestinal tract. This test helps diagnose conditions such as pancreatic insufficiency, cystic fibrosis, celiac disease, and Crohn’s disease.

Quantitative Determination of Fat

Akkermansia muciniphila is a gut bacterium that helps maintain the intestinal mucosa and a healthy gut lining. It is linked to beneficial metabolic and immune effects and may play a key role in gut health, weight management, and overall well-being.

Akkermansia muciniphila

Pancreatic elastase is an enzyme produced by the pancreas that plays a crucial role in protein digestion. Measuring its levels in stool can offer valuable insights into pancreatic function. Because the enzyme remains stable in fecal matter, it serves as a dependable marker for evaluating the exocrine function of the pancreas, particularly in diagnosing pancreatic insufficiency.

Pancreatic elastase

The quantitative determination of nitrogen (N) is a laboratory test that measures nitrogen levels in bodily excretions, typically urine or feces, to evaluate protein digestion and absorption. This test is crucial for assessing nutritional status, especially in clinical settings where protein-energy malnutrition or imbalances may be a concern. It offers important insights into metabolic functions related to protein turnover and can help diagnose conditions affecting protein metabolism, including kidney disease, malabsorption syndromes, and certain metabolic disorders.

NSG1Quantitative Determination of Nitrogen

p-Cresol sulfate is a metabolite produced by intestinal bacteria through the breakdown of the amino acid tyrosine. It is primarily detoxified in the liver and excreted by the kidneys. Higher levels may indicate increased bacterial protein fermentation, impaired detoxification, or reduced renal clearance. Balanced levels reflect efficient gut microbial metabolism and normal liver–kidney function.

p-Cresol Sulfate

Acinetobacter spp. are a group of gram-negative bacteria commonly found in soil, water, and occasionally in the human gut. Although not typically predominant in a healthy microbiome, certain strains can colonize the intestines, especially after antibiotic use or in hospital settings. Some species, such as Acinetobacter baumannii, are recognized for their antibiotic resistance and their role in infections, particularly in immunocompromised patients. In stool analysis, the presence of Acinetobacter may indicate environmental exposure, microbial imbalance, or antibiotic-induced changes in gut flora.

Acinetobacteria spp.

Firmicutes is one of the major bacterial phyla in the human gut microbiome, comprising many species involved in extracting energy from food. These bacteria efficiently break down complex carbohydrates and produce short-chain fatty acids, which can support gut and metabolic health. However, a disproportionately high ratio of Firmicutes to Bacteroidetes has been linked in some studies to obesity and metabolic disturbances. Therefore, the balance of Firmicutes is an important marker for assessing microbial diversity and potential metabolic tendencies. Individual health effects depend on overall composition and host factors.

Firmicutes

The stool water content analysis is a test that measures the amount of water present in feces. This assessment is important for diagnosing conditions related to abnormal water absorption or secretion in the gastrointestinal tract. It helps identify causes of diarrhea, which may result from infections, inflammatory bowel diseases (IBD), irritable bowel syndrome (IBS), or malabsorption syndromes, where there is either excessive water secretion or insufficient absorption in the intestines.

Quantitative Determination of Water

Methane breath testing is a diagnostic method that measures the amount of methane gas produced by intestinal bacteria. Methane is produced by specific gut microbes during the fermentation of certain carbohydrates. Elevated methane levels in breath tests are associated with conditions such as Small Intestinal Bacterial Overgrowth (SIBO), fructose intolerance, and sorbitol intolerance, which can cause symptoms like bloating, constipation, abdominal pain, and changes in bowel habits.

Methane

Calprotectin is a protein found in white blood cells that acts as a marker of inflammation, especially in the gut. Measuring calprotectin levels in stool helps evaluate the extent of intestinal inflammation. This test is useful for diagnosing and monitoring inflammatory bowel diseases (IBD) such as Crohn’s disease and ulcerative colitis, and for distinguishing them from irritable bowel syndrome (IBS), which typically does not raise calprotectin levels.

Calprotectin

Histamine (Stool) is a diagnostic marker used to evaluate allergic and inflammatory activity in the gastrointestinal tract. Histamine is a biogenic amine released by immune cells in response to allergens and plays a crucial role in inflammation. Elevated stool histamine levels may indicate conditions such as food allergies, inflammatory bowel disease (IBD), or mast cell activation, aiding in the diagnosis and management of related immune responses.

Histamine in Stool

The secretory IgA (sIgA) level indicates the amount of a key immune protein called Immunoglobulin A, primarily found in mucosal areas such as the intestines, respiratory tract, and saliva. Secretory IgA is essential in the body’s first line of defense by binding to pathogens and preventing their entry, helping to protect mucosal surfaces and support overall immune and gut health.

Secretory IgA

Yeast is a type of fungus naturally found in the human body, especially in the gut and on the skin. In normal amounts, it is harmless and part of a healthy microbiome. However, an imbalance can lead to overgrowth, which may cause various health issues. Factors like diet, antibiotic use, and overall health can influence yeast levels.

Yeast/fungus

Geotrichum candidum is a fungus commonly found in the environment, including soil, water, air, and certain foods. It is also a natural part of the human microbiota, typically residing in the gut and on the skin. While usually harmless, it can become opportunistic and cause infections in individuals with weakened immune systems.

Geotrichum candidum

Diamine oxidase (DAO) is an enzyme that helps break down histamine, a compound involved in immune function, digestion, and nervous system activity. Maintaining healthy DAO levels is important for regulating histamine balance and lowering the risk of histamine intolerance.

Diamin oxidase (DAO)

Alpha-1 antitrypsin (AAT) is a protein primarily produced by the liver that helps protect the lungs and other organs from enzymes that cause inflammation. Measuring AAT levels in stool can help detect intestinal protein loss and inflammation, assisting in the diagnosis of gastrointestinal conditions such as inflammatory bowel disease and protein-losing enteropathy.

Alpha-1 antitrypsin

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Gut Microbiome Test Large: Detailed Gut Health Assessment
The Gut Microbiome Test Large from GetTested is a thorough test that evaluates key aspects of gut health. It measures digestive functions, digestive residues, and the levels of various bacteria and yeasts in the intestinal flora. Additionally, it assesses digestive malabsorption and inflammatory markers. This test aims to provide a comprehensive understanding of your digestive system and gut flora health.
Who Would Benefit from the Gut Microbiome Test Large?
Individuals with digestive issues, such as imbalances in gut flora, candida overgrowth, or food digestion difficulties, will find this test particularly beneficial. It offers an in-depth analysis of potential gut imbalances and can aid in preventing future health problems.
This test is not suitable for babies or children below the age of 6 years old.
Components of the Gut Microbiome Test Large
This comprehensive test encompasses:

Evaluations of 13 types of gut bacteria, like Bifidobacterium and Lactobacillus.
Analyses of 4 yeast types, including Candida albicans and Geotrichum candidum.
pH value assessments.
Digestive residue checks for fat, nitrogen, sugar, and water.
Measurements of secretory IgA, pancreatic elastase, bile acids, alpha-1 antitrypsin, and calprotectin.

Understanding Yeast Overgrowth
The test also focuses on Candida albicans, a yeast that, in moderate amounts, aids digestion and nutrient absorption but can cause health issues if overgrown. Factors such as antibiotics, diet, heavy metal poisoning, and certain medications can lead to yeast overgrowth. Thus, the test includes analysis of Candida spp., Geotrichum candidum, and general yeast levels.
How to Perform the Gut Microbiome Test Large
This stool test is conveniently conducted at home. The test kit includes all necessary materials. After collection, the sample is sent to our ISO-certified lab for analysis. You'll receive your results digitally, offering a comprehensive view of your gut health.
For Leaky Gut Assessment
Additionally, for those seeking an in-depth analysis including leaky gut indicators, we recommend the Gut Microbiome Test XL. This advanced version extends the Large test's capabilities by also measuring zonulin and histamine.

Gut Microbiome Test Large: Detailed Gut Health Assessment 
The Gut Microbiome Test Large from GetTested is a thorough test that evaluates key aspects of gut health. It measures digestive functions, digestive residues, and the levels of various bacteria and yeasts in the intestinal flora. Additionally, it assesses digestive malabsorption and inflammatory markers. This test aims to provide a comprehensive understanding of your digestive system and gut flora health. 
Who Would Benefit from the Gut Microbiome Test Large? 
Individuals with digestive issues, such as imbalances in gut flora, candida overgrowth, or food digestion difficulties, will find this test particularly beneficial. It offers an in-depth analysis of potential gut imbalances and can aid in preventing future health problems. 
This test is not suitable for babies or children below the age of 6 years old. 
Components of the Gut Microbiome Test Large 
This comprehensive test encompasses:
Evaluations of 13 types of gut bacteria, like Bifidobacterium and Lactobacillus. 
Analyses of 4 yeast types, including Candida albicans and Geotrichum candidum. 
pH value assessments. 
Digestive residue checks for fat, nitrogen, sugar, and water. 
Measurements of secretory IgA, pancreatic elastase, bile acids, alpha-1 antitrypsin, and calprotectin.
Understanding Yeast Overgrowth 
The test also focuses on Candida albicans, a yeast that, in moderate amounts, aids digestion and nutrient absorption but can cause health issues if overgrown. Factors such as antibiotics, diet, heavy metal poisoning, and certain medications can lead to yeast overgrowth. Thus, the test includes analysis of Candida spp., Geotrichum candidum, and general yeast levels. 
How to Perform the Gut Microbiome Test Large 
This stool test is conveniently conducted at home. The test kit includes all necessary materials. After collection, the sample is sent to our ISO-certified lab for analysis. You'll receive your results digitally, offering a comprehensive view of your gut health. 
For Leaky Gut Assessment 
Additionally, for those seeking an in-depth analysis including leaky gut indicators, we recommend the Gut Microbiome Test XL. This advanced version extends the Large test's capabilities by also measuring zonulin and histamine.

Gut Microbiome Test Large

About GetTested's Medium Gut Microbiome Test
Discover your gut health intricacies with GetTested's Medium Gut Microbiome Test. This advanced test includes everything from the Small version and adds analysis of two significant bacteria: Faecalibacterium prausnitzii and Akkermansia muciniphila, key to understanding conditions like obesity, type-2 diabetes, and inflammatory bowel diseases.
About the Gut microbiome
The gut microbiome affects the body throughout your life, as it is responsible for digestion of food, the immune system and many other processes in the body.
Bacteria are different in each person’s bowel. Scientists have discovered roughly a thousand different types of bacteria residing in the bowel and each individual has about 160 different types, so every bowel is unique in that way. You will likely have different bacteria in your own bowel than another person does. However, there’s more than just bacteria. Microbes (archaea, viruses, yeast) live in the bowel as well. The small bowel has microbes too, but we have more knowledge on the ones living in the large bowel, since it’s easier to test poo samples. 
A large number of scientists are interested in the bacteria inside our guts. Understandably so, since we are now aware that gut bacteria have many vital functions that are responsible for good health. They feed the cells in our bodies and control inflammation. The gut system is similar to our immune system: complex and important in maintaining our well-being. There is a rare possibility that your immune system and the gut bacteria cause diseases, which is why an analysis of your faeces is necessary. You can easily do an analysis by taking a microbiome test and discover what microbes live in your gut.
What GetTested’s test analyses
This test analyses all bacteria and yeast from the small microbiome test. These bacteria include:
Bifidobacterium, Lactobacillus, Clostridium, Klebsiella, Escherichia coli (E. coli) Escherichia coli Biovare, Proteus, Pseudomonas,.Enterobacter, Serratia, Hafnia, Enterococcus, Bacteroides
Gut Microbiome Test Medium analyses four types of yeast: Candida Albicans, Candida SPP, Geotrichum Candidum, Yeast/fungus
The test also analyses ph value. In addition to all of these, the medium test examines the bacteria Akkermansia muciniphila and Faecalibacterium prausnitzii.
About the key bacteria: Akkermansia muciniphila and Faecalibacterium prausnitzii
Akkermansia muciniphila is one of the most common types of bacteria. It helps strengthen the gut lining and improve general health of the gut. Because of this, iIt is crucial for managing obesity and type-2 diabetes, impacting intestinal mucosa and inflammation. Akkermansia muciniphila levels are often lower in individuals with obesity, type-2 diabetes, inflammation, or weakened immune systems
Faecalibacterium prausnitzii is crucial in protecting the colon, controlling metabolism and the immune response. It is a major butyric acid producer and is vital for preventing colorectal cancer and IBD, acting as a health bioindicator. 
Similarly to Akkermansia muciniphila, Faecalibacterium prausnitzii is usually found in lower levels in intestinal diseases, which serves as a valuable biomarker for gut health.
Understanding Obesity and Intestinal Flora
Research links intestinal flora, particularly Akkermansia muciniphila, to obesity. Various studies have in fact, brought to light the beneficial impact of Akkermansia muciniphila on treating obesity. Akkermanisa reduces the risk of obesity, by reducing body weight. 
Transferring gut flora from thin to overweight individuals has shown promising results in weight loss. However, imbalanced gut flora is not the sole cause of obesity; diet, lifestyle, and thyroid issues also play roles.
Who would benefit from this Gut Microbiome Test?
This is the best Gut Microbiome Test for those seeking a deep dive into their gut flora, especially if dealing with obesity, diabetes, or gut-related issues. For a more extensive analysis, consider GetTested's Large or XL Gut Microbiome Tests, which cover additional aspects like digestive function and leaky gut.
This test is not suitable for babies or children below the age of 6 years old.
How to test gut microbiome: Test Procedure and Options
The Medium Gut Microbiome Test from GetTested is easy to use at home. You receive a kit and can expect digital results. Explore more with our Gut Microbiome Test Large and Gut Microbiome Test XL tests for comprehensive gut health assessments, including digestive functions and additional biomarkers.

About GetTested's Medium Gut Microbiome Test 
Discover your gut health intricacies with GetTested's Medium Gut Microbiome Test. This advanced test includes everything from the Small version and adds analysis of two significant bacteria: Faecalibacterium prausnitzii and Akkermansia muciniphila, key to understanding conditions like obesity, type-2 diabetes, and inflammatory bowel diseases. 
About the Gut microbiome 
The gut microbiome affects the body throughout your life, as it is responsible for digestion of food, the immune system and many other processes in the body. 
Bacteria are different in each person’s bowel. Scientists have discovered roughly a thousand different types of bacteria residing in the bowel and each individual has about 160 different types, so every bowel is unique in that way. You will likely have different bacteria in your own bowel than another person does. However, there’s more than just bacteria. Microbes (archaea, viruses, yeast) live in the bowel as well. The small bowel has microbes too, but we have more knowledge on the ones living in the large bowel, since it’s easier to test poo samples.  
A large number of scientists are interested in the bacteria inside our guts. Understandably so, since we are now aware that gut bacteria have many vital functions that are responsible for good health. They feed the cells in our bodies and control inflammation. The gut system is similar to our immune system: complex and important in maintaining our well-being. There is a rare possibility that your immune system and the gut bacteria cause diseases, which is why an analysis of your faeces is necessary. You can easily do an analysis by taking a microbiome test and discover what microbes live in your gut. 
What GetTested’s test analyses 
This test analyses all bacteria and yeast from the small microbiome test. These bacteria include: 
Bifidobacterium, Lactobacillus, Clostridium, Klebsiella, Escherichia coli (E. coli) Escherichia coli Biovare, Proteus, Pseudomonas,.Enterobacter, Serratia, Hafnia, Enterococcus, Bacteroides 
Gut Microbiome Test Medium analyses four types of yeast: Candida Albicans, Candida SPP, Geotrichum Candidum, Yeast/fungus 
The test also analyses ph value. In addition to all of these, the medium test examines the bacteria Akkermansia muciniphila and Faecalibacterium prausnitzii. 
About the key bacteria: Akkermansia muciniphila and Faecalibacterium prausnitzii 
Akkermansia muciniphila is one of the most common types of bacteria. It helps strengthen the gut lining and improve general health of the gut. Because of this, iIt is crucial for managing obesity and type-2 diabetes, impacting intestinal mucosa and inflammation. Akkermansia muciniphila levels are often lower in individuals with obesity, type-2 diabetes, inflammation, or weakened immune systems 
Faecalibacterium prausnitzii is crucial in protecting the colon, controlling metabolism and the immune response. It is a major butyric acid producer and is vital for preventing colorectal cancer and IBD, acting as a health bioindicator.  
Similarly to Akkermansia muciniphila, Faecalibacterium prausnitzii is usually found in lower levels in intestinal diseases, which serves as a valuable biomarker for gut health. 
Understanding Obesity and Intestinal Flora 
Research links intestinal flora, particularly Akkermansia muciniphila, to obesity. Various studies have in fact, brought to light the beneficial impact of Akkermansia muciniphila on treating obesity. Akkermanisa reduces the risk of obesity, by reducing body weight.  
Transferring gut flora from thin to overweight individuals has shown promising results in weight loss. However, imbalanced gut flora is not the sole cause of obesity; diet, lifestyle, and thyroid issues also play roles. 
Who would benefit from this Gut Microbiome Test? 
This is the best Gut Microbiome Test for those seeking a deep dive into their gut flora, especially if dealing with obesity, diabetes, or gut-related issues. For a more extensive analysis, consider GetTested's Large or XL Gut Microbiome Tests, which cover additional aspects like digestive function and leaky gut. 
This test is not suitable for babies or children below the age of 6 years old. 
How to test gut microbiome: Test Procedure and Options 
The Medium Gut Microbiome Test from GetTested is easy to use at home. You receive a kit and can expect digital results. Explore more with our Gut Microbiome Test Large and Gut Microbiome Test XL tests for comprehensive gut health assessments, including digestive functions and additional biomarkers.

Gut Microbiome Test Medium

In-Depth Analysis of Gut Flora
The Gut Microbiome Test Small is a comprehensive analysis offered by GetTested. It evaluates 13 distinct bacteria and 4 common yeasts in the gut. Notably, an imbalance, such as an overgrowth of pathogenic bacteria or a deficit of beneficial ones, can lead to health complications. Additionally, research has linked gut flora imbalances to serious diseases like Parkinson's and Alzheimer's.
Key Bacterial and Yeast Strains Analyzed
This test examines:

Beneficial Bacteria: Like Bifidobacterium and Lactobacillus, crucial for digestion, vitamin production, and infection prevention.
Potentially Harmful Bacteria: Including Clostridium, Klebsiella, and Escherichia coli, which can cause infections under certain conditions.
Yeast Varieties: Such as Candida spp and Candida albicans, usually harmless but can lead to infections if overgrown.

Who Should Consider This Test?
Ideal for those with mild gut issues or a keen interest in optimizing their health. It's also suitable for individuals with conditions linked to gut flora, like depression, autism, Parkinson’s, or Alzheimer’s. For more severe gut problems, consider our more comprehensive tests.
This test is not suitable for babies or children below the age of 6 years old.
Understanding Gut Bacteria Functions
Moreover, gut bacteria play a pivotal role in our health, feeding cells, regulating inflammation, and comprising a system as intricate as our immunity. Therefore, analyzing fecal matter can shed light on the microbes in your gut and their impact on your health.
Looking for a More Comprehensive Test?

Gut Microbiome Medium: Expands on the Small test, including Akkermansia muciniphila and Faecalibacterium prausnitzii analysis.
Gut Microbiome Large: Adds assessments of digestive functions, including pancreatic elastase and bile acids.
Gut Microbiome XL: Covers all aspects of the Large test, plus examines zonulin and histamine levels.

In-Depth Analysis of Gut Flora 
The Gut Microbiome Test Small is a comprehensive analysis offered by GetTested. It evaluates 13 distinct bacteria and 4 common yeasts in the gut. Notably, an imbalance, such as an overgrowth of pathogenic bacteria or a deficit of beneficial ones, can lead to health complications. Additionally, research has linked gut flora imbalances to serious diseases like Parkinson's and Alzheimer's. 
Key Bacterial and Yeast Strains Analyzed 
This test examines:
Beneficial Bacteria: Like Bifidobacterium and Lactobacillus, crucial for digestion, vitamin production, and infection prevention. 
Potentially Harmful Bacteria: Including Clostridium, Klebsiella, and Escherichia coli, which can cause infections under certain conditions. 
Yeast Varieties: Such as Candida spp and Candida albicans, usually harmless but can lead to infections if overgrown.
Who Should Consider This Test? 
Ideal for those with mild gut issues or a keen interest in optimizing their health. It's also suitable for individuals with conditions linked to gut flora, like depression, autism, Parkinson’s, or Alzheimer’s. For more severe gut problems, consider our more comprehensive tests. 
This test is not suitable for babies or children below the age of 6 years old. 
Understanding Gut Bacteria Functions 
Moreover, gut bacteria play a pivotal role in our health, feeding cells, regulating inflammation, and comprising a system as intricate as our immunity. Therefore, analyzing fecal matter can shed light on the microbes in your gut and their impact on your health. 
Looking for a More Comprehensive Test?
Gut Microbiome Medium: Expands on the Small test, including Akkermansia muciniphila and Faecalibacterium prausnitzii analysis. 
Gut Microbiome Large: Adds assessments of digestive functions, including pancreatic elastase and bile acids. 
Gut Microbiome XL: Covers all aspects of the Large test, plus examines zonulin and histamine levels.

Gut Microbiome Test Small

Stool Tests

GetTested&rsquo;s Gut Microbiome Test Medium is a gut flora test targeted primarily to problems with obesity, diabetes, &nbsp;inflammatory diseases. It measures 15 bacteria such as Lactobacillus, Bifidobacterium, Akkermansia muciniphila and Faecalibacterium prausnitzii.

GetTested&rsquo;s Gut Microbiome Test Large is the test for you who want a comprehensive overview of your gut health. Many health problems arise from imbalances in our gut and this test is an in-depth analysis of your gut by measuring the presence of bacteria, yeast, the pH of the stool and digestive functions, such as pancreatic elastase, bile acids, digestive residues, as well as alpha-1 antitrypsin, calprotectin and secretory IgA.
If you&rsquo;re dealing with IBS, consider combining this with our&nbsp;<a href="/product/sibo-test-lab">SIBO Test</a>&nbsp;to further investigate potential root causes of your symptoms.

A healthy gut impacts your brain, immune system, and overall well-being. The Gut Microbiome (or Microbiota) is home to many types of bacteria and microbes, including yeast. These organisms are responsible for fundamental biochemical processes.
GetTested&rsquo;s Gut Microbiome Test Small is a gut flora test that examines common bacteria such as Lactobacillus, Bifidobacterium, and Clostridium, as well as the yeast Candida albicans. It measures a total of&nbsp;13 common bacteria&nbsp;and&nbsp;4 yeasts.
For a more comprehensive gut health assessment, consider our <a href="/product/gut-microbiome-test-xl">Gut Microbiome Test XL</a>.

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Geotrichum candidum

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